Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS39005.1 | icuB | MexAM1_META1p1133 | MexAM1_META1p1077 | Putative nosX precursor (nitrous oxide reductase); Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Hypothetical protein; No homology to any previously reported sequences. | 0.436 |
ACS39005.1 | icuC | MexAM1_META1p1133 | MexAM1_META1p0967 | Putative nosX precursor (nitrous oxide reductase); Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.436 |
icuB | ACS39005.1 | MexAM1_META1p1077 | MexAM1_META1p1133 | Hypothetical protein; No homology to any previously reported sequences. | Putative nosX precursor (nitrous oxide reductase); Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | 0.436 |
icuB | icuC | MexAM1_META1p1077 | MexAM1_META1p0967 | Hypothetical protein; No homology to any previously reported sequences. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.900 |
icuC | ACS39005.1 | MexAM1_META1p0967 | MexAM1_META1p1133 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative nosX precursor (nitrous oxide reductase); Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. | 0.436 |
icuC | icuB | MexAM1_META1p0967 | MexAM1_META1p1077 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Hypothetical protein; No homology to any previously reported sequences. | 0.900 |