ACS39042.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS39042.1

Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (687 aa)

Predicted Functional Partners:

ACS39041.1

0.949

ACS39040.1

0.888

celA

0.883

ACS39043.1

0.864

ACS38806.1

0.613

ACS38838.1

0.597

ACS41196.1

0.456

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS38806.1	ACS38838.1	MexAM1_META1p0898	MexAM1_META1p0940	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	0.916
ACS38806.1	ACS39040.1	MexAM1_META1p0898	MexAM1_META1p1168	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.883
ACS38806.1	ACS39041.1	MexAM1_META1p0898	MexAM1_META1p1169	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.851
ACS38806.1	ACS39042.1	MexAM1_META1p0898	MexAM1_META1p1170	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.613
ACS38806.1	celA	MexAM1_META1p0898	MexAM1_META1p1167	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Cellulose synthase (UDP-forming); Function of strongly homologous gene; enzyme.	0.925
ACS38838.1	ACS38806.1	MexAM1_META1p0940	MexAM1_META1p0898	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.916
ACS38838.1	ACS39040.1	MexAM1_META1p0940	MexAM1_META1p1168	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.878
ACS38838.1	ACS39041.1	MexAM1_META1p0940	MexAM1_META1p1169	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.843
ACS38838.1	ACS39042.1	MexAM1_META1p0940	MexAM1_META1p1170	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.597
ACS38838.1	celA	MexAM1_META1p0940	MexAM1_META1p1167	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	Cellulose synthase (UDP-forming); Function of strongly homologous gene; enzyme.	0.927
ACS39040.1	ACS38806.1	MexAM1_META1p1168	MexAM1_META1p0898	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.883
ACS39040.1	ACS38838.1	MexAM1_META1p1168	MexAM1_META1p0940	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	0.878
ACS39040.1	ACS39041.1	MexAM1_META1p1168	MexAM1_META1p1169	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.910
ACS39040.1	ACS39042.1	MexAM1_META1p1168	MexAM1_META1p1170	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.888
ACS39040.1	ACS39043.1	MexAM1_META1p1168	MexAM1_META1p1171	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Hypothetical protein, putative exported protein; No homology to any previously reported sequences.	0.684
ACS39040.1	celA	MexAM1_META1p1168	MexAM1_META1p1167	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Cellulose synthase (UDP-forming); Function of strongly homologous gene; enzyme.	0.983
ACS39041.1	ACS38806.1	MexAM1_META1p1169	MexAM1_META1p0898	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Cellulose synthase catalytic subunit (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.851
ACS39041.1	ACS38838.1	MexAM1_META1p1169	MexAM1_META1p0940	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Cellulose synthase (UDP-forming); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	0.843
ACS39041.1	ACS39040.1	MexAM1_META1p1169	MexAM1_META1p1168	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative CelB-like protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.910
ACS39041.1	ACS39042.1	MexAM1_META1p1169	MexAM1_META1p1170	Putative cellulase, endoglucanase (celC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.949