STRINGSTRING
ACS39096.1 ACS39096.1 ACS39095.1 ACS39095.1 ACS39097.1 ACS39097.1 ACS41900.1 ACS41900.1 ACS38087.1 ACS38087.1 ACS39092.1 ACS39092.1 ACS39093.1 ACS39093.1 phyR phyR ACS39677.1 ACS39677.1 ACS39094.1 ACS39094.1 ACS39099.1 ACS39099.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ACS39096.1RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)    
Predicted Functional Partners:
ACS39095.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.932
ACS39097.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
      0.760
ACS41900.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.757
ACS38087.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.696
ACS39092.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.594
ACS39093.1
Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.594
phyR
PhyR; Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However, it is not known whether this regulation is direct or indirect. Also induces several dehydrogenases.
 
  
 0.568
ACS39677.1
Hypothetical protein; No homology to any previously reported sequences; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.550
ACS39094.1
Hypothetical protein; No homology to any previously reported sequences.
       0.548
ACS39099.1
40-residue YVTN beta-propeller repeat family protein; Homologs of previously reported genes of unknown function.
 
    0.527
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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