STRINGSTRING
ACS39125.1 ACS39125.1 ACS39124.1 ACS39124.1 ACS41900.1 ACS41900.1 phyR phyR ACS39677.1 ACS39677.1 ACS38087.1 ACS38087.1 ACS39095.1 ACS39095.1 rpoC rpoC rpoB rpoB rpoA rpoA rpoZ rpoZ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
ACS39125.1RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)    
Predicted Functional Partners:
ACS39124.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.805
ACS41900.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.734
phyR
PhyR; Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However, it is not known whether this regulation is direct or indirect. Also induces several dehydrogenases.
 
  
 0.637
ACS39677.1
Hypothetical protein; No homology to any previously reported sequences; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.553
ACS38087.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.519
ACS39095.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.518
rpoC
RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.513
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.476
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.467
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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