STRINGSTRING
ACS39139.1 ACS39139.1 ACS40465.1 ACS40465.1 ACS39541.1 ACS39541.1 ctaA ctaA nepR nepR trx trx trx-2 trx-2 ACS39136.1 ACS39136.1 ACS39137.1 ACS39137.1 ACS39138.1 ACS39138.1 phyR phyR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS39139.1Hypothetical protein; No homology to any previously reported sequences. (65 aa)    
Predicted Functional Partners:
ACS40465.1
Hypothetical protein; No homology to any previously reported sequences.
      
 0.680
ACS39541.1
Hypothetical protein; No homology to any previously reported sequences.
      
 0.606
ctaA
Putative cytochrome c oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
      
 0.560
nepR
Anti-sigma factor; Function experimentally demonstrated in the studied strain; factor.
      
 0.530
trx
Thioredoxin; Function of strongly homologous gene; carrier.
      
 0.521
trx-2
Thioredoxin; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thioredoxin family.
      
 0.521
ACS39136.1
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
       0.463
ACS39137.1
Putative tripartite ATP-independent periplasmic transporter, permease (DctQ) subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.463
ACS39138.1
Putative tripartite ATP-independent periplasmic transporter, putative membrane component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.463
phyR
PhyR; Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However, it is not known whether this regulation is direct or indirect. Also induces several dehydrogenases.
      
 0.449
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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