Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS39229.1 | ACS39230.1 | MexAM1_META1p1367 | MexAM1_META1p1368 | Conserved hypothetical protein, ChrB-like domain, rhodanese/cell cycle control phosphatase domain; Homologs of previously reported genes of unknown function. | Putative chromate transport protein ChrA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.963 |
ACS39229.1 | ung | MexAM1_META1p1367 | MexAM1_META1p1366 | Conserved hypothetical protein, ChrB-like domain, rhodanese/cell cycle control phosphatase domain; Homologs of previously reported genes of unknown function. | Uracil-DNA glycosylase (UDG); Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.426 |
ACS39230.1 | ACS39229.1 | MexAM1_META1p1368 | MexAM1_META1p1367 | Putative chromate transport protein ChrA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Conserved hypothetical protein, ChrB-like domain, rhodanese/cell cycle control phosphatase domain; Homologs of previously reported genes of unknown function. | 0.963 |
ACS39230.1 | ung | MexAM1_META1p1368 | MexAM1_META1p1366 | Putative chromate transport protein ChrA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Uracil-DNA glycosylase (UDG); Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.425 |
ung | ACS39229.1 | MexAM1_META1p1366 | MexAM1_META1p1367 | Uracil-DNA glycosylase (UDG); Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | Conserved hypothetical protein, ChrB-like domain, rhodanese/cell cycle control phosphatase domain; Homologs of previously reported genes of unknown function. | 0.426 |
ung | ACS39230.1 | MexAM1_META1p1366 | MexAM1_META1p1368 | Uracil-DNA glycosylase (UDG); Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | Putative chromate transport protein ChrA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.425 |