STRINGSTRING
etfA etfA etfB etfB etfD etfD ACS42290.1 ACS42290.1 ibd2 ibd2 ACS41768.1 ACS41768.1 ACS42125.1 ACS42125.1 rplC rplC fadE fadE pdhB pdhB ACS41771.1 ACS41771.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
etfAElectron transfer flavoprotein alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (317 aa)    
Predicted Functional Partners:
etfB
Electron transfer flavoprotein beta subunit; Function of strongly homologous gene; enzyme.
 0.999
etfD
Electron transfer flavoprotein ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
 
 0.996
ACS42290.1
Putative Short-chain specific acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.989
ibd2
isobutyryl-CoA dehydrogenase; Function experimentally demonstrated in the studied strain; enzyme.
 
 0.971
ACS41768.1
Putative electron transfer flavoprotein, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
 0.968
ACS42125.1
acyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
 
 0.933
rplC
50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
 
 
    0.906
fadE
acyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.885
pdhB
Pyruvate dehydrogenase E1 beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.868
ACS41771.1
NADH:flavin oxidoreductase/NADH oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.847
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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