ACS39622.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS39622.1

Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (144 aa)

Predicted Functional Partners:

ACS39625.1

0.934

ACS39626.1

0.914

ACS39624.1

0.905

ACS39621.1

0.893

ACS39620.1

0.845

copB

0.821

ACS39721.1

0.821

ACS39581.1

0.788

ACS39008.1

0.787

ACS39623.1

0.772

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS39008.1	ACS39581.1	MexAM1_META1p1136	MexAM1_META1p1737	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.788
ACS39008.1	ACS39621.1	MexAM1_META1p1136	MexAM1_META1p1779	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.803
ACS39008.1	ACS39622.1	MexAM1_META1p1136	MexAM1_META1p1780	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.787
ACS39008.1	ACS39624.1	MexAM1_META1p1136	MexAM1_META1p1782	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.791
ACS39008.1	ACS39625.1	MexAM1_META1p1136	MexAM1_META1p1783	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.811
ACS39008.1	ACS39626.1	MexAM1_META1p1136	MexAM1_META1p1784	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.598
ACS39581.1	ACS39008.1	MexAM1_META1p1737	MexAM1_META1p1136	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.788
ACS39581.1	ACS39620.1	MexAM1_META1p1737	MexAM1_META1p1778	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.788
ACS39581.1	ACS39621.1	MexAM1_META1p1737	MexAM1_META1p1779	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.789
ACS39581.1	ACS39622.1	MexAM1_META1p1737	MexAM1_META1p1780	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.788
ACS39581.1	ACS39624.1	MexAM1_META1p1737	MexAM1_META1p1782	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.737
ACS39581.1	ACS39625.1	MexAM1_META1p1737	MexAM1_META1p1783	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.796
ACS39581.1	ACS39626.1	MexAM1_META1p1737	MexAM1_META1p1784	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.695
ACS39620.1	ACS39581.1	MexAM1_META1p1778	MexAM1_META1p1737	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	ABC transporter substrate binding protein (subunit A); Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.788
ACS39620.1	ACS39621.1	MexAM1_META1p1778	MexAM1_META1p1779	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.897
ACS39620.1	ACS39622.1	MexAM1_META1p1778	MexAM1_META1p1780	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.845
ACS39620.1	ACS39623.1	MexAM1_META1p1778	MexAM1_META1p1781	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.785
ACS39620.1	ACS39624.1	MexAM1_META1p1778	MexAM1_META1p1782	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.864
ACS39620.1	ACS39625.1	MexAM1_META1p1778	MexAM1_META1p1783	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.868
ACS39620.1	ACS39626.1	MexAM1_META1p1778	MexAM1_META1p1784	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.786