node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS39651.1 | rplC | MexAM1_META1p1809 | MexAM1_META1p2153 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.722 |
ACS39651.1 | rplD | MexAM1_META1p1809 | MexAM1_META1p2154 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel. | 0.734 |
ACS39651.1 | rplT | MexAM1_META1p1809 | MexAM1_META1p1522 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.714 |
ACS39651.1 | rplU | MexAM1_META1p1809 | MexAM1_META1p4856 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.715 |
ACS39651.1 | rplW | MexAM1_META1p1809 | MexAM1_META1p2155 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.745 |
ACS39651.1 | rpmA | MexAM1_META1p1809 | MexAM1_META1p4855 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L27; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL27 family. | 0.710 |
ACS39651.1 | rpmE | MexAM1_META1p1809 | MexAM1_META1p2358 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L31; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL31 family. | 0.724 |
ACS39651.1 | rpmI | MexAM1_META1p1809 | MexAM1_META1p1521 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L35; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL35 family. | 0.719 |
ACS39651.1 | rpsG | MexAM1_META1p1809 | MexAM1_META1p2149 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.713 |
ACS39651.1 | rpsO | MexAM1_META1p1809 | MexAM1_META1p4417 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.710 |
rplC | ACS39651.1 | MexAM1_META1p2153 | MexAM1_META1p1809 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.722 |
rplC | rplD | MexAM1_META1p2153 | MexAM1_META1p2154 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplT | MexAM1_META1p2153 | MexAM1_META1p1522 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.986 |
rplC | rplU | MexAM1_META1p2153 | MexAM1_META1p4856 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.973 |
rplC | rplW | MexAM1_META1p2153 | MexAM1_META1p2155 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.998 |
rplC | rpmA | MexAM1_META1p2153 | MexAM1_META1p4855 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L27; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
rplC | rpmE | MexAM1_META1p2153 | MexAM1_META1p2358 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L31; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL31 family. | 0.966 |
rplC | rpmI | MexAM1_META1p2153 | MexAM1_META1p1521 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L35; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL35 family. | 0.970 |
rplC | rpsG | MexAM1_META1p2153 | MexAM1_META1p2149 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.985 |
rplC | rpsO | MexAM1_META1p2153 | MexAM1_META1p4417 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.983 |