STRINGSTRING
ACS39677.1 ACS39677.1 ACS38086.1 ACS38086.1 ACS39676.1 ACS39676.1 ACS39125.1 ACS39125.1 ACS39096.1 ACS39096.1 ACS39095.1 ACS39095.1 ACS38087.1 ACS38087.1 rpoC rpoC rpoB rpoB rpoA rpoA rpoZ rpoZ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ACS39677.1Hypothetical protein; No homology to any previously reported sequences; Belongs to the sigma-70 factor family. ECF subfamily. (365 aa)    
Predicted Functional Partners:
ACS38086.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.589
ACS39676.1
Hypothetical protein; No homology to any previously reported sequences.
       0.560
ACS39125.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.553
ACS39096.1
RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.550
ACS39095.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.532
ACS38087.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.516
rpoC
RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.513
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.500
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.496
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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