Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACS38289.1 | ACS39850.1 | MexAM1_META1p0337 | MexAM1_META1p2048 | Conserved hypothetical protein precursor; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.626 |
| ACS38289.1 | recO | MexAM1_META1p0337 | MexAM1_META1p0821 | Conserved hypothetical protein precursor; Homologs of previously reported genes of unknown function. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.547 |
| ACS39849.1 | ACS39850.1 | MexAM1_META1p2047 | MexAM1_META1p2048 | Putative permease (PerM family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.918 |
| ACS39849.1 | ppk | MexAM1_META1p2047 | MexAM1_META1p2049 | Putative permease (PerM family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Polyphosphate kinase, component of RNA degradosome; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.417 |
| ACS39849.1 | recF | MexAM1_META1p2047 | MexAM1_META1p0003 | Putative permease (PerM family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Putative RecF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.548 |
| ACS39850.1 | ACS38289.1 | MexAM1_META1p2048 | MexAM1_META1p0337 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Conserved hypothetical protein precursor; Homologs of previously reported genes of unknown function. | 0.626 |
| ACS39850.1 | ACS39849.1 | MexAM1_META1p2048 | MexAM1_META1p2047 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative permease (PerM family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.918 |
| ACS39850.1 | dnaB | MexAM1_META1p2048 | MexAM1_META1p4320 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Replicative DNA helicase (dnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.772 |
| ACS39850.1 | dnaN | MexAM1_META1p2048 | MexAM1_META1p0002 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.971 |
| ACS39850.1 | ppk | MexAM1_META1p2048 | MexAM1_META1p2049 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Polyphosphate kinase, component of RNA degradosome; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. | 0.623 |
| ACS39850.1 | recF | MexAM1_META1p2048 | MexAM1_META1p0003 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative RecF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.814 |
| ACS39850.1 | recO | MexAM1_META1p2048 | MexAM1_META1p0821 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.730 |
| ACS39850.1 | ribE-2 | MexAM1_META1p2048 | MexAM1_META1p3380 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Riboflavin synthase, alpha subunit; Function of strongly homologous gene; enzyme. | 0.739 |
| ACS39850.1 | rpmE | MexAM1_META1p2048 | MexAM1_META1p2358 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 50S ribosomal protein L31; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL31 family. | 0.824 |
| ACS39850.1 | rpmJ | MexAM1_META1p2048 | MexAM1_META1p2938 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 50S ribosomal protein L36; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL36 family. | 0.796 |
| dnaB | ACS39850.1 | MexAM1_META1p4320 | MexAM1_META1p2048 | Replicative DNA helicase (dnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.772 |
| dnaB | dnaN | MexAM1_META1p4320 | MexAM1_META1p0002 | Replicative DNA helicase (dnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.570 |
| dnaB | recO | MexAM1_META1p4320 | MexAM1_META1p0821 | Replicative DNA helicase (dnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.459 |
| dnaN | ACS39850.1 | MexAM1_META1p0002 | MexAM1_META1p2048 | DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.971 |
| dnaN | dnaB | MexAM1_META1p0002 | MexAM1_META1p4320 | DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Replicative DNA helicase (dnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.570 |
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