Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS38644.1 | ACS39893.1 | MexAM1_META1p0715 | MexAM1_META1p2096 | N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p); Function of strongly homologous gene; enzyme. | Conserved hypothetical protein (DUF952); Homologs of previously reported genes of unknown function. | 0.569 |
ACS39893.1 | ACS38644.1 | MexAM1_META1p2096 | MexAM1_META1p0715 | Conserved hypothetical protein (DUF952); Homologs of previously reported genes of unknown function. | N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p); Function of strongly homologous gene; enzyme. | 0.569 |
ACS39893.1 | ACS39894.1 | MexAM1_META1p2096 | MexAM1_META1p2097 | Conserved hypothetical protein (DUF952); Homologs of previously reported genes of unknown function. | Putative LexA/Signal peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the peptidase S24 family. | 0.541 |
ACS39893.1 | pyrD | MexAM1_META1p2096 | MexAM1_META1p2095 | Conserved hypothetical protein (DUF952); Homologs of previously reported genes of unknown function. | Dihydro-orotate oxidase, FMN-linked; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.919 |
ACS39894.1 | ACS39893.1 | MexAM1_META1p2097 | MexAM1_META1p2096 | Putative LexA/Signal peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the peptidase S24 family. | Conserved hypothetical protein (DUF952); Homologs of previously reported genes of unknown function. | 0.541 |
ACS39894.1 | pyrD | MexAM1_META1p2097 | MexAM1_META1p2095 | Putative LexA/Signal peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the peptidase S24 family. | Dihydro-orotate oxidase, FMN-linked; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.541 |
pyrD | ACS39893.1 | MexAM1_META1p2095 | MexAM1_META1p2096 | Dihydro-orotate oxidase, FMN-linked; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Conserved hypothetical protein (DUF952); Homologs of previously reported genes of unknown function. | 0.919 |
pyrD | ACS39894.1 | MexAM1_META1p2095 | MexAM1_META1p2097 | Dihydro-orotate oxidase, FMN-linked; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Putative LexA/Signal peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the peptidase S24 family. | 0.541 |