Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS39882.1 | ACS39979.1 | MexAM1_META1p2085 | MexAM1_META1p2184 | Hypothetical protein, putative 5'-nucleotidase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Hypothetical protein; No homology to any previously reported sequences. | 0.460 |
ACS39978.1 | ACS39979.1 | MexAM1_META1p2183 | MexAM1_META1p2184 | Hypothetical protein; No homology to any previously reported sequences. | Hypothetical protein; No homology to any previously reported sequences. | 0.404 |
ACS39979.1 | ACS39882.1 | MexAM1_META1p2184 | MexAM1_META1p2085 | Hypothetical protein; No homology to any previously reported sequences. | Hypothetical protein, putative 5'-nucleotidase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.460 |
ACS39979.1 | ACS39978.1 | MexAM1_META1p2184 | MexAM1_META1p2183 | Hypothetical protein; No homology to any previously reported sequences. | Hypothetical protein; No homology to any previously reported sequences. | 0.404 |
ACS39979.1 | emrB | MexAM1_META1p2184 | MexAM1_META1p4491 | Hypothetical protein; No homology to any previously reported sequences. | Multidrug efflux system protein; Function of strongly homologous gene; transporter; Belongs to the major facilitator superfamily. | 0.495 |
ACS39979.1 | vapC | MexAM1_META1p2184 | MexAM1_META1p3134 | Hypothetical protein; No homology to any previously reported sequences. | Conserved hypothetical protein with putative PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.421 |
emrB | ACS39979.1 | MexAM1_META1p4491 | MexAM1_META1p2184 | Multidrug efflux system protein; Function of strongly homologous gene; transporter; Belongs to the major facilitator superfamily. | Hypothetical protein; No homology to any previously reported sequences. | 0.495 |
vapC | ACS39979.1 | MexAM1_META1p3134 | MexAM1_META1p2184 | Conserved hypothetical protein with putative PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | Hypothetical protein; No homology to any previously reported sequences. | 0.421 |