Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS40040.1 | ACS40041.1 | MexAM1_META1p2248 | MexAM1_META1p2249 | Putative Lon family ATP-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | 0.645 |
ACS40040.1 | trx | MexAM1_META1p2248 | MexAM1_META1p2247 | Putative Lon family ATP-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Thioredoxin; Function of strongly homologous gene; carrier. | 0.676 |
ACS40041.1 | ACS40040.1 | MexAM1_META1p2249 | MexAM1_META1p2248 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | Putative Lon family ATP-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.645 |
ACS40041.1 | ACS42345.1 | MexAM1_META1p2249 | MexAM1_META1p4717 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | Putative histidine triad family protein, putative nucleoside phosphate hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.403 |
ACS40041.1 | kdsB | MexAM1_META1p2249 | MexAM1_META1p0233 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.512 |
ACS40041.1 | prmC | MexAM1_META1p2249 | MexAM1_META1p0728 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | 0.409 |
ACS40041.1 | trx | MexAM1_META1p2249 | MexAM1_META1p2247 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | Thioredoxin; Function of strongly homologous gene; carrier. | 0.501 |
ACS42345.1 | ACS40041.1 | MexAM1_META1p4717 | MexAM1_META1p2249 | Putative histidine triad family protein, putative nucleoside phosphate hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | 0.403 |
kdsB | ACS40041.1 | MexAM1_META1p0233 | MexAM1_META1p2249 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | 0.512 |
prmC | ACS40041.1 | MexAM1_META1p0728 | MexAM1_META1p2249 | protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | 0.409 |
trx | ACS40040.1 | MexAM1_META1p2247 | MexAM1_META1p2248 | Thioredoxin; Function of strongly homologous gene; carrier. | Putative Lon family ATP-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.676 |
trx | ACS40041.1 | MexAM1_META1p2247 | MexAM1_META1p2249 | Thioredoxin; Function of strongly homologous gene; carrier. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0434 family. | 0.501 |