STRINGSTRING
rnpA rnpA oxaA oxaA ACS42491.1 ACS42491.1 rpmH rpmH ACS39836.1 ACS39836.1 rnd rnd ACS41128.1 ACS41128.1 ACS40241.1 ACS40241.1 ACS42492.1 ACS42492.1 ACS42709.1 ACS42709.1 ACS42063.1 ACS42063.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnpARibonuclease P protein component (RNaseP protein, RNase P protein, protein C5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (165 aa)    
Predicted Functional Partners:
oxaA
Transmembrane protein, OxaA-like, preprotein translocase component; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
     0.823
ACS42491.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.701
rpmH
50S ribosomal subunit protein L34; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL34 family.
       0.617
ACS39836.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.595
rnd
Ribonuclease D (RNase D); Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
  
  
  0.594
ACS41128.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.567
ACS40241.1
3'-5' exonuclease; Function of strongly homologous gene; enzyme.
  
  
  0.556
ACS42492.1
Putative helicase-exonuclease type V protein family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the helicase family. UvrD subfamily.
  
     0.541
ACS42709.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.519
ACS42063.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.513
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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