STRINGSTRING
cpaD cpaD cpaB cpaB ACS40224.1 ACS40224.1 cpaE cpaE cpaA cpaA ACS40220.1 ACS40220.1 ACS40229.1 ACS40229.1 ACS40228.1 ACS40228.1 ACS40928.1 ACS40928.1 ACS40221.1 ACS40221.1 ACS40094.1 ACS40094.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaDPilus assembly protein cpaD; Function of strongly homologous gene; structure. (248 aa)    
Predicted Functional Partners:
cpaB
Pilus assembly protein cpaB; Function of strongly homologous gene; factor.
 
     0.912
ACS40224.1
Putative pilus assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Belongs to the bacterial secretin family.
 
   
 0.904
cpaE
Pilus assembly protein cpaE; Function of strongly homologous gene; structure.
 
     0.902
cpaA
Type IV prepilin peptidase, cpaA; Function of strongly homologous gene; enzyme.
 
     0.862
ACS40220.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.827
ACS40229.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.808
ACS40228.1
Pilus assembly protein, type II secretion protein; Function of strongly homologous gene; transporter.
 
     0.801
ACS40928.1
Conserved hypothetical protein, tetratricopeptide TPR_2 repeat protein; Homologs of previously reported genes of unknown function.
 
     0.796
ACS40221.1
Flp/Fap pilin component; Function of strongly homologous gene; factor.
 
     0.792
ACS40094.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.773
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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