ACS40229.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS40229.1

Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (323 aa)

Predicted Functional Partners:

ACS40228.1

0.990

cpaF

0.985

cpaE

0.981

cpaB

0.978

ACS40224.1

0.949

ACS40220.1

0.863

ACS40928.1

0.859

cpaA

0.839

cpaD

0.808

ACS38927.1

0.795

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS38927.1	ACS40220.1	MexAM1_META1p1033	MexAM1_META1p2441	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.484
ACS38927.1	ACS40228.1	MexAM1_META1p1033	MexAM1_META1p2449	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pilus assembly protein, type II secretion protein; Function of strongly homologous gene; transporter.	0.762
ACS38927.1	ACS40229.1	MexAM1_META1p1033	MexAM1_META1p2450	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.795
ACS38927.1	cpaA	MexAM1_META1p1033	MexAM1_META1p2443	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Type IV prepilin peptidase, cpaA; Function of strongly homologous gene; enzyme.	0.412
ACS38927.1	cpaB	MexAM1_META1p1033	MexAM1_META1p2444	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pilus assembly protein cpaB; Function of strongly homologous gene; factor.	0.779
ACS38927.1	cpaE	MexAM1_META1p1033	MexAM1_META1p2447	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Pilus assembly protein cpaE; Function of strongly homologous gene; structure.	0.509
ACS40220.1	ACS38927.1	MexAM1_META1p2441	MexAM1_META1p1033	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative flagellar FlbT family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.484
ACS40220.1	ACS40224.1	MexAM1_META1p2441	MexAM1_META1p2445	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative pilus assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Belongs to the bacterial secretin family.	0.640
ACS40220.1	ACS40228.1	MexAM1_META1p2441	MexAM1_META1p2449	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Pilus assembly protein, type II secretion protein; Function of strongly homologous gene; transporter.	0.770
ACS40220.1	ACS40229.1	MexAM1_META1p2441	MexAM1_META1p2450	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.863
ACS40220.1	ACS40928.1	MexAM1_META1p2441	MexAM1_META1p3181	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein, tetratricopeptide TPR_2 repeat protein; Homologs of previously reported genes of unknown function.	0.819
ACS40220.1	cpaA	MexAM1_META1p2441	MexAM1_META1p2443	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Type IV prepilin peptidase, cpaA; Function of strongly homologous gene; enzyme.	0.899
ACS40220.1	cpaB	MexAM1_META1p2441	MexAM1_META1p2444	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Pilus assembly protein cpaB; Function of strongly homologous gene; factor.	0.950
ACS40220.1	cpaD	MexAM1_META1p2441	MexAM1_META1p2446	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Pilus assembly protein cpaD; Function of strongly homologous gene; structure.	0.827
ACS40220.1	cpaE	MexAM1_META1p2441	MexAM1_META1p2447	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Pilus assembly protein cpaE; Function of strongly homologous gene; structure.	0.932
ACS40220.1	cpaF	MexAM1_META1p2441	MexAM1_META1p2448	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Secretory protein kinase, cpaF; Function of strongly homologous gene; enzyme.	0.807
ACS40224.1	ACS40220.1	MexAM1_META1p2445	MexAM1_META1p2441	Putative pilus assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Belongs to the bacterial secretin family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.640
ACS40224.1	ACS40228.1	MexAM1_META1p2445	MexAM1_META1p2449	Putative pilus assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Belongs to the bacterial secretin family.	Pilus assembly protein, type II secretion protein; Function of strongly homologous gene; transporter.	0.933
ACS40224.1	ACS40229.1	MexAM1_META1p2445	MexAM1_META1p2450	Putative pilus assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Belongs to the bacterial secretin family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.949
ACS40224.1	ACS40928.1	MexAM1_META1p2445	MexAM1_META1p3181	Putative pilus assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Belongs to the bacterial secretin family.	Conserved hypothetical protein, tetratricopeptide TPR_2 repeat protein; Homologs of previously reported genes of unknown function.	0.835