node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS40241.1 | hrpB | MexAM1_META1p2462 | MexAM1_META1p4680 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 0.825 |
ACS40241.1 | recO | MexAM1_META1p2462 | MexAM1_META1p0821 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.696 |
ACS40241.1 | rnr | MexAM1_META1p2462 | MexAM1_META1p2382 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.880 |
ACS40241.1 | rph | MexAM1_META1p2462 | MexAM1_META1p0317 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase); Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.874 |
ACS40241.1 | rplD | MexAM1_META1p2462 | MexAM1_META1p2154 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel. | 0.721 |
ACS40241.1 | rplW | MexAM1_META1p2462 | MexAM1_META1p2155 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.798 |
ACS40241.1 | rpsA | MexAM1_META1p2462 | MexAM1_META1p0055 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.885 |
ACS40241.1 | rpsD | MexAM1_META1p2462 | MexAM1_META1p5190 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.825 |
ACS40241.1 | rpsK | MexAM1_META1p2462 | MexAM1_META1p2169 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.816 |
ACS40241.1 | rpsM | MexAM1_META1p2462 | MexAM1_META1p2170 | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.686 |
hrpB | ACS40241.1 | MexAM1_META1p4680 | MexAM1_META1p2462 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 0.825 |
hrpB | rph | MexAM1_META1p4680 | MexAM1_META1p0317 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase); Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.733 |
hrpB | rplD | MexAM1_META1p4680 | MexAM1_META1p2154 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel. | 0.721 |
hrpB | rpsA | MexAM1_META1p4680 | MexAM1_META1p0055 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.938 |
hrpB | rpsD | MexAM1_META1p4680 | MexAM1_META1p5190 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.913 |
hrpB | rpsK | MexAM1_META1p4680 | MexAM1_META1p2169 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.907 |
hrpB | rpsM | MexAM1_META1p4680 | MexAM1_META1p2170 | Helicase, ATP-dependent; Function of strongly homologous gene; enzyme. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.671 |
recO | ACS40241.1 | MexAM1_META1p0821 | MexAM1_META1p2462 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 0.696 |
rnr | ACS40241.1 | MexAM1_META1p2382 | MexAM1_META1p2462 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 3'-5' exonuclease; Function of strongly homologous gene; enzyme. | 0.880 |
rnr | rph | MexAM1_META1p2382 | MexAM1_META1p0317 | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase); Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.974 |