STRINGSTRING
phr phr sodB sodB ACS40809.1 ACS40809.1 ACS42882.1 ACS42882.1 infB infB ybeY ybeY ACS39663.1 ACS39663.1 ACS38577.1 ACS38577.1 rpsQ rpsQ ada ada ACS39077.1 ACS39077.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
phrDeoxyribodipyrimidine photolyase (DNA photolyase); Function of strongly homologous gene; enzyme. (467 aa)    
Predicted Functional Partners:
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.703
ACS40809.1
Putative tryptophan-rich sensory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
  
 0.671
ACS42882.1
Tryptophan-rich sensory membrane protein precursor (CrtK-like protein); Function of strongly homologous gene; membrane component.
 
  
 0.669
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
   0.649
ybeY
Putative metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.649
ACS39663.1
Putative fatty acid synthase multidomain protein (rkpA-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.599
ACS38577.1
Conserved hypothetical protein with putative FAD/NAD(P)-binding domain; Homologs of previously reported genes of unknown function.
   
    0.519
rpsQ
30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
    
   0.482
ada
Fused DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
     
 0.463
ACS39077.1
Low molecular weight phosphotyrosine protein phosphatase; Function of strongly homologous gene; enzyme; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
   0.459
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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