STRINGSTRING
soxR soxR soxS soxS soxV soxV zntR zntR soxC soxC aroG aroG soxD soxD soxD-2 soxD-2 oxyR oxyR cueR cueR dxs-2 dxs-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
soxRTranscriptional regulator, ArsR family; Function of homologous gene experimentally demonstrated in an other organism; putative regulator. (118 aa)    
Predicted Functional Partners:
soxS
Regulatory protein SoxS precursor; Function of strongly homologous gene; enzyme.
     
 0.872
soxV
Sulfur oxidation V protein, cytochrome c-type biogenesis protein; Function of strongly homologous gene; enzyme.
     
 0.805
zntR
DNA-binding transcriptional regulator, MerR-like protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.666
soxC
Sulfite oxidase precursor (tat pathway signal); Function of strongly homologous gene; enzyme.
     
 0.665
aroG
2-dehydro-3-deoxyphosphoheptonate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.609
soxD
Sarcosine oxidase, delta subunit; Function of strongly homologous gene; enzyme.
      
 0.607
soxD-2
Sarcosine oxidase, delta subunit; Function of strongly homologous gene; enzyme.
      
 0.607
oxyR
Oxidative stress transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.530
cueR
DNA-binding transcriptional activator of copper-responsive regulon genes; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.459
dxs-2
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
      
 0.448
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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