Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS40429.1 | ACS40430.1 | MexAM1_META1p2659 | MexAM1_META1p2660 | Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.466 |
ACS40429.1 | rpoA | MexAM1_META1p2659 | MexAM1_META1p2167 | Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.407 |
ACS40429.1 | rpoB | MexAM1_META1p2659 | MexAM1_META1p4405 | Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.416 |
ACS40430.1 | ACS40429.1 | MexAM1_META1p2660 | MexAM1_META1p2659 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator. | 0.466 |
rpoA | ACS40429.1 | MexAM1_META1p2167 | MexAM1_META1p2659 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator. | 0.407 |
rpoA | rpoB | MexAM1_META1p2167 | MexAM1_META1p4405 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
rpoB | ACS40429.1 | MexAM1_META1p4405 | MexAM1_META1p2659 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcriptional regulator, Crp/Fnr family; Function of strongly homologous gene; regulator. | 0.416 |
rpoB | rpoA | MexAM1_META1p4405 | MexAM1_META1p2167 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |