STRINGSTRING
ACS40725.1 ACS40725.1 fliM fliM fliM-2 fliM-2 ACS40726.1 ACS40726.1 rplD rplD trmD trmD rimM rimM rpoB rpoB rplJ rplJ fusA fusA ACS41011.1 ACS41011.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
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a 3D structure is known or predicted
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gene co-occurrence
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textmining
co-expression
protein homology
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ACS40725.1Putative spermidine synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (223 aa)    
Predicted Functional Partners:
fliM
Flagellar motor switch protein FliM; Function of strongly homologous gene; structure.
    
   0.596
fliM-2
Flagellar motor switch protein FliM; Function of strongly homologous gene; structure.
    
   0.596
ACS40726.1
Hypothetical protein; No homology to any previously reported sequences.
       0.558
rplD
50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel.
   
    0.525
trmD
tRNA (guanine)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
   
    0.523
rimM
Putative 16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
   
    0.521
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.510
rplJ
50S ribosomal subunit protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
    0.489
fusA
Protein chain elongation factor EF-G, GTP-binding; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase f [...]
   
    0.467
ACS41011.1
Hypothetical protein; Similar to elongation factor G (C-terminus); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
   
    0.467
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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