Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS41011.1 | ACS41012.1 | MexAM1_META1p3269 | MexAM1_META1p3270 | Hypothetical protein; Similar to elongation factor G (C-terminus); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | 0.431 |
ACS41012.1 | ACS41011.1 | MexAM1_META1p3270 | MexAM1_META1p3269 | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | Hypothetical protein; Similar to elongation factor G (C-terminus); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. | 0.431 |
ACS41012.1 | ACS42543.1 | MexAM1_META1p3270 | MexAM1_META1p4936 | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | Pyridoxamine 5'-phosphate oxidase-related; Function of strongly homologous gene; enzyme. | 0.410 |
ACS41012.1 | ACS42684.1 | MexAM1_META1p3270 | MexAM1_META1p5080 | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | AAA ATPase; Function of strongly homologous gene; enzyme. | 0.573 |
ACS41012.1 | dctA-2 | MexAM1_META1p3270 | MexAM1_META1p3271 | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | Citrate and C4-dicarboxylic acids transport protein (DAACS family); Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.448 |
ACS41012.1 | yehL | MexAM1_META1p3270 | MexAM1_META1p1405 | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | Putative ABC superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.572 |
ACS42543.1 | ACS41012.1 | MexAM1_META1p4936 | MexAM1_META1p3270 | Pyridoxamine 5'-phosphate oxidase-related; Function of strongly homologous gene; enzyme. | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | 0.410 |
ACS42684.1 | ACS41012.1 | MexAM1_META1p5080 | MexAM1_META1p3270 | AAA ATPase; Function of strongly homologous gene; enzyme. | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | 0.573 |
dctA-2 | ACS41012.1 | MexAM1_META1p3271 | MexAM1_META1p3270 | Citrate and C4-dicarboxylic acids transport protein (DAACS family); Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | 0.448 |
yehL | ACS41012.1 | MexAM1_META1p1405 | MexAM1_META1p3270 | Putative ABC superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | GFA domain-containing protein; Homologs of previously reported genes of unknown function. | 0.572 |