Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS41009.1 | rlpA | MexAM1_META1p3267 | MexAM1_META1p3394 | Putative membrane bound lytic murein transglycosylase B, mltB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.436 |
ACS41132.1 | rlpA | MexAM1_META1p3395 | MexAM1_META1p3394 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.548 |
ACS41747.1 | murA | MexAM1_META1p4094 | MexAM1_META1p1964 | ATP-dependent urea carboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.479 |
ACS41747.1 | rlpA | MexAM1_META1p4094 | MexAM1_META1p3394 | ATP-dependent urea carboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.408 |
ACS42583.1 | rlpA | MexAM1_META1p4979 | MexAM1_META1p3394 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.445 |
murA | ACS41747.1 | MexAM1_META1p1964 | MexAM1_META1p4094 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | ATP-dependent urea carboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.479 |
murA | rlpA | MexAM1_META1p1964 | MexAM1_META1p3394 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.400 |
rlpA | ACS41009.1 | MexAM1_META1p3394 | MexAM1_META1p3267 | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | Putative membrane bound lytic murein transglycosylase B, mltB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.436 |
rlpA | ACS41132.1 | MexAM1_META1p3394 | MexAM1_META1p3395 | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.548 |
rlpA | ACS41747.1 | MexAM1_META1p3394 | MexAM1_META1p4094 | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | ATP-dependent urea carboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.408 |
rlpA | ACS42583.1 | MexAM1_META1p3394 | MexAM1_META1p4979 | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.445 |
rlpA | murA | MexAM1_META1p3394 | MexAM1_META1p1964 | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.400 |
rlpA | tolB | MexAM1_META1p3394 | MexAM1_META1p5216 | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | Protein tolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.590 |
tolB | rlpA | MexAM1_META1p5216 | MexAM1_META1p3394 | Protein tolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | Putative rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.590 |