node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACS41134.1 | rplC | MexAM1_META1p3397 | MexAM1_META1p2153 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.722 |
ACS41134.1 | rplD | MexAM1_META1p3397 | MexAM1_META1p2154 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel. | 0.734 |
ACS41134.1 | rplM | MexAM1_META1p3397 | MexAM1_META1p2739 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.708 |
ACS41134.1 | rplT | MexAM1_META1p3397 | MexAM1_META1p1522 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.714 |
ACS41134.1 | rplU | MexAM1_META1p3397 | MexAM1_META1p4856 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.715 |
ACS41134.1 | rpmA | MexAM1_META1p3397 | MexAM1_META1p4855 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 50S ribosomal protein L27; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL27 family. | 0.710 |
ACS41134.1 | rpsC | MexAM1_META1p3397 | MexAM1_META1p2159 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.708 |
ACS41134.1 | rpsE | MexAM1_META1p3397 | MexAM1_META1p2175 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.724 |
ACS41134.1 | rpsG | MexAM1_META1p3397 | MexAM1_META1p2149 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.713 |
ACS41134.1 | rpsO | MexAM1_META1p3397 | MexAM1_META1p4417 | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.710 |
rplC | ACS41134.1 | MexAM1_META1p2153 | MexAM1_META1p3397 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Putative ATP-binding protein with two ATPase domains, ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.722 |
rplC | rplD | MexAM1_META1p2153 | MexAM1_META1p2154 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L4, regulates expression of S10 operon; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplM | MexAM1_META1p2153 | MexAM1_META1p2739 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
rplC | rplT | MexAM1_META1p2153 | MexAM1_META1p1522 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.986 |
rplC | rplU | MexAM1_META1p2153 | MexAM1_META1p4856 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.973 |
rplC | rpmA | MexAM1_META1p2153 | MexAM1_META1p4855 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L27; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
rplC | rpsC | MexAM1_META1p2153 | MexAM1_META1p2159 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
rplC | rpsE | MexAM1_META1p2153 | MexAM1_META1p2175 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.990 |
rplC | rpsG | MexAM1_META1p2153 | MexAM1_META1p2149 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.985 |
rplC | rpsO | MexAM1_META1p2153 | MexAM1_META1p4417 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.983 |