ACS41241.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS41241.1

Hypothetical protein; No homology to any previously reported sequences. (227 aa)

Predicted Functional Partners:

ACS40937.1

0.610

ACS38500.1

0.541

ACS41240.1

0.527

ACS41958.1

0.486

ACS39340.1

0.479

ACS39282.1

0.450

ACS41136.1

0.437

ACS42259.1

0.434

ACS42446.1

0.431

ACS38617.1

0.429

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS38500.1	ACS39340.1	MexAM1_META1p0562	MexAM1_META1p1478	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative DNA polymerase III, delta subunit, holA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.657
ACS38500.1	ACS40937.1	MexAM1_META1p0562	MexAM1_META1p3190	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.573
ACS38500.1	ACS41241.1	MexAM1_META1p0562	MexAM1_META1p3505	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.541
ACS38500.1	ACS42259.1	MexAM1_META1p0562	MexAM1_META1p4630	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative transcriptional regulator, MarR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.598
ACS38500.1	ACS42446.1	MexAM1_META1p0562	MexAM1_META1p4837	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.508
ACS38617.1	ACS39282.1	MexAM1_META1p0688	MexAM1_META1p1420	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.422
ACS38617.1	ACS40937.1	MexAM1_META1p0688	MexAM1_META1p3190	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.421
ACS38617.1	ACS41136.1	MexAM1_META1p0688	MexAM1_META1p3399	Hypothetical protein; No homology to any previously reported sequences.	Hypothetical protein; No homology to any previously reported sequences.	0.607
ACS38617.1	ACS41241.1	MexAM1_META1p0688	MexAM1_META1p3505	Hypothetical protein; No homology to any previously reported sequences.	Hypothetical protein; No homology to any previously reported sequences.	0.429
ACS38617.1	ACS41958.1	MexAM1_META1p0688	MexAM1_META1p4322	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.415
ACS39282.1	ACS38617.1	MexAM1_META1p1420	MexAM1_META1p0688	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.422
ACS39282.1	ACS40937.1	MexAM1_META1p1420	MexAM1_META1p3190	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.461
ACS39282.1	ACS41241.1	MexAM1_META1p1420	MexAM1_META1p3505	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.450
ACS39282.1	ACS41958.1	MexAM1_META1p1420	MexAM1_META1p4322	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.466
ACS39282.1	ACS42446.1	MexAM1_META1p1420	MexAM1_META1p4837	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.716
ACS39340.1	ACS38500.1	MexAM1_META1p1478	MexAM1_META1p0562	Putative DNA polymerase III, delta subunit, holA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.657
ACS39340.1	ACS40937.1	MexAM1_META1p1478	MexAM1_META1p3190	Putative DNA polymerase III, delta subunit, holA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.559
ACS39340.1	ACS41241.1	MexAM1_META1p1478	MexAM1_META1p3505	Putative DNA polymerase III, delta subunit, holA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Hypothetical protein; No homology to any previously reported sequences.	0.479
ACS40937.1	ACS38500.1	MexAM1_META1p3190	MexAM1_META1p0562	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.573
ACS40937.1	ACS38617.1	MexAM1_META1p3190	MexAM1_META1p0688	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.421