ACS41289.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS41289.1

Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (346 aa)

Predicted Functional Partners:

ACS41298.1

0.900

ssuB-4

0.840

ssuD

0.800

ACS41753.1

0.785

tauB

0.780

ACS42434.1

0.778

ygfU

0.774

ACS41290.1

0.773

ACS41291.1

0.773

ssuA-2

0.773

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS41289.1	ACS41290.1	MexAM1_META1p3557	MexAM1_META1p3558	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.773
ACS41289.1	ACS41291.1	MexAM1_META1p3557	MexAM1_META1p3559	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	0.773
ACS41289.1	ACS41298.1	MexAM1_META1p3557	MexAM1_META1p3566	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	ABC family transporter, periplasmic protein; Function of strongly homologous gene; transporter.	0.900
ACS41289.1	ACS41753.1	MexAM1_META1p3557	MexAM1_META1p4100	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	ABC transporter, ATPase; Function of strongly homologous gene; transporter.	0.785
ACS41289.1	ACS42434.1	MexAM1_META1p3557	MexAM1_META1p4821	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative aliphatic sulfonates transport permease protein ssuC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.778
ACS41289.1	ssuA-2	MexAM1_META1p3557	MexAM1_META1p3560	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Sulfonate transport system substrate-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.773
ACS41289.1	ssuB-4	MexAM1_META1p3557	MexAM1_META1p4822	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Alkanesulfonate transporter subunit; Function of strongly homologous gene; transporter.	0.840
ACS41289.1	ssuD	MexAM1_META1p3557	MexAM1_META1p3561	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Alkanesulfonate monooxygenase; Function of strongly homologous gene; enzyme.	0.800
ACS41289.1	tauB	MexAM1_META1p3557	MexAM1_META1p1045	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Taurine transport protein (ABC superfamily, atp_bind); Function of strongly homologous gene; transporter.	0.780
ACS41289.1	ygfU	MexAM1_META1p3557	MexAM1_META1p3562	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Transporter; Function of strongly homologous gene; transporter.	0.774
ACS41290.1	ACS41289.1	MexAM1_META1p3558	MexAM1_META1p3557	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.773
ACS41290.1	ACS41291.1	MexAM1_META1p3558	MexAM1_META1p3559	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	0.996
ACS41290.1	ssuA-2	MexAM1_META1p3558	MexAM1_META1p3560	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sulfonate transport system substrate-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.773
ACS41290.1	ssuD	MexAM1_META1p3558	MexAM1_META1p3561	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Alkanesulfonate monooxygenase; Function of strongly homologous gene; enzyme.	0.773
ACS41290.1	ygfU	MexAM1_META1p3558	MexAM1_META1p3562	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transporter; Function of strongly homologous gene; transporter.	0.773
ACS41291.1	ACS41289.1	MexAM1_META1p3559	MexAM1_META1p3557	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	Putative extracellular solute-binding protein, putative sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.773
ACS41291.1	ACS41290.1	MexAM1_META1p3559	MexAM1_META1p3558	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	Putative sulfite oxidase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.996
ACS41291.1	ssuA-2	MexAM1_META1p3559	MexAM1_META1p3560	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	Sulfonate transport system substrate-binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.773
ACS41291.1	ssuD	MexAM1_META1p3559	MexAM1_META1p3561	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	Alkanesulfonate monooxygenase; Function of strongly homologous gene; enzyme.	0.773
ACS41291.1	ygfU	MexAM1_META1p3559	MexAM1_META1p3562	Cytochrome c, class I precursor; Function of strongly homologous gene; carrier.	Transporter; Function of strongly homologous gene; transporter.	0.773

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About