STRINGSTRING
nahD nahD ssuB-2 ssuB-2 ACS41297.1 ACS41297.1 ACS41298.1 ACS41298.1 ACS40077.1 ACS40077.1 ACS41299.1 ACS41299.1 ACS39006.1 ACS39006.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nahD2-hydroxychromene-2-carboxylate isomerase (HCCA isomerase); Function of strongly homologous gene; enzyme. (218 aa)    
Predicted Functional Partners:
ssuB-2
ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
       0.773
ACS41297.1
ABC superfamily transporter membrane protein; Function of strongly homologous gene; transporter.
       0.773
ACS41298.1
ABC family transporter, periplasmic protein; Function of strongly homologous gene; transporter.
       0.773
ACS40077.1
Periplasmic oxidoreductase, DsbA family; Function of strongly homologous gene; enzyme.
 
    
0.737
ACS41299.1
Putative transcriptional regulator, Crp/Fnr family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.464
ACS39006.1
Putative regulatory protein NosR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.405
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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