ACS41395.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS41395.1

Hypothetical protein; No homology to any previously reported sequences. (207 aa)

Predicted Functional Partners:

ACS38591.1

0.964

ACS41394.1

0.908

ACS38589.1

0.891

ACS38590.1

0.883

ACS42104.1

0.629

ACS41400.1

0.601

ACS41397.1

0.588

ACS41396.1

0.580

ACS41402.1

0.558

shc

0.529

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS38589.1	ACS38590.1	MexAM1_META1p0659	MexAM1_META1p0660	Putative ABC transporter, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.999
ACS38589.1	ACS38591.1	MexAM1_META1p0659	MexAM1_META1p0661	Putative ABC transporter, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative ABC transporter, periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.998
ACS38589.1	ACS41395.1	MexAM1_META1p0659	MexAM1_META1p3684	Putative ABC transporter, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Hypothetical protein; No homology to any previously reported sequences.	0.891
ACS38590.1	ACS38589.1	MexAM1_META1p0660	MexAM1_META1p0659	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative ABC transporter, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.999
ACS38590.1	ACS38591.1	MexAM1_META1p0660	MexAM1_META1p0661	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative ABC transporter, periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.997
ACS38590.1	ACS41395.1	MexAM1_META1p0660	MexAM1_META1p3684	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Hypothetical protein; No homology to any previously reported sequences.	0.883
ACS38591.1	ACS38589.1	MexAM1_META1p0661	MexAM1_META1p0659	Putative ABC transporter, periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative ABC transporter, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.998
ACS38591.1	ACS38590.1	MexAM1_META1p0661	MexAM1_META1p0660	Putative ABC transporter, periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.997
ACS38591.1	ACS41395.1	MexAM1_META1p0661	MexAM1_META1p3684	Putative ABC transporter, periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	Hypothetical protein; No homology to any previously reported sequences.	0.964
ACS41394.1	ACS41395.1	MexAM1_META1p3683	MexAM1_META1p3684	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.908
ACS41394.1	ACS41396.1	MexAM1_META1p3683	MexAM1_META1p3685	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative glycosyl transferase, putative membrane-associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.877
ACS41394.1	ACS41397.1	MexAM1_META1p3683	MexAM1_META1p3686	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Radical SAM superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.863
ACS41394.1	ACS41400.1	MexAM1_META1p3683	MexAM1_META1p3689	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative membrane protein with sterol sensing domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.791
ACS41394.1	ACS41402.1	MexAM1_META1p3683	MexAM1_META1p3691	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative nucleoside phosphorylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.774
ACS41394.1	shc	MexAM1_META1p3683	MexAM1_META1p1818	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Squalene-hopene-cyclase; Function of strongly homologous gene; enzyme.	0.786
ACS41395.1	ACS38589.1	MexAM1_META1p3684	MexAM1_META1p0659	Hypothetical protein; No homology to any previously reported sequences.	Putative ABC transporter, permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.891
ACS41395.1	ACS38590.1	MexAM1_META1p3684	MexAM1_META1p0660	Hypothetical protein; No homology to any previously reported sequences.	Putative ABC transporter, ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.883
ACS41395.1	ACS38591.1	MexAM1_META1p3684	MexAM1_META1p0661	Hypothetical protein; No homology to any previously reported sequences.	Putative ABC transporter, periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.964
ACS41395.1	ACS41394.1	MexAM1_META1p3684	MexAM1_META1p3683	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.908
ACS41395.1	ACS41396.1	MexAM1_META1p3684	MexAM1_META1p3685	Hypothetical protein; No homology to any previously reported sequences.	Putative glycosyl transferase, putative membrane-associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.580