STRINGSTRING
ACS41784.1 ACS41784.1 ACS41783.1 ACS41783.1 ACS41782.1 ACS41782.1 ACS42140.1 ACS42140.1 ACS39350.1 ACS39350.1 ACS40027.1 ACS40027.1 ACS38876.1 ACS38876.1 ACS39906.1 ACS39906.1 ACS38438.1 ACS38438.1 rpoC rpoC rpoB rpoB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ACS41784.1RNA polymerase sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily. (173 aa)    
Predicted Functional Partners:
ACS41783.1
Putative FecR, iron siderophore sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.941
ACS41782.1
tonB-dependent siderophore receptor protein; Function of strongly homologous gene; putative receptor.
 
  
 0.731
ACS42140.1
Putative TonB-dependent siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
  
 0.639
ACS39350.1
Putative TonB-dependent siderophore receptor (putative ferrichrome outer membrane transporter); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
  
 0.636
ACS40027.1
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
  
 0.632
ACS38876.1
Putative TonB-dependent porin receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
  
 0.583
ACS39906.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.574
ACS38438.1
Putative TonB-dependent siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
  
 0.535
rpoC
RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.513
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.507
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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