STRINGSTRING
ragD ragD ragC ragC czcA czcA ACS40268.1 ACS40268.1 ACS40267.1 ACS40267.1 ACS40424.1 ACS40424.1 ACS40266.1 ACS40266.1 ACS40182.1 ACS40182.1 ACS41907.1 ACS41907.1 ACS42573.1 ACS42573.1 acrF-2 acrF-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ragDEfflux transporter, RND family, membrane fusion protein subunit; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (424 aa)    
Predicted Functional Partners:
ragC
Multidrug efflux pump; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.975
czcA
Heavy metal efflux pump CzcA; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.692
ACS40268.1
Putative outer membrane lipoprotein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.667
ACS40267.1
Multidrug efflux system, subunit C; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.651
ACS40424.1
Putative secretion protein, putative RND family efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.645
ACS40266.1
Multidrug efflux protein, subunit B; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.625
ACS40182.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.620
ACS41907.1
Putative Multidrug resistance protein mexB (Multidrug-efflux transporter mexB); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   0.580
ACS42573.1
AcrB/AcrD/AcrF family protein; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.576
acrF-2
Multidrug transport protein, acriflavin resistance protein F (RND family); Function of strongly homologous gene; transporter.
 
   0.565
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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