STRINGSTRING
ACS41871.1 ACS41871.1 engA engA yhhF yhhF cmk cmk xthA xthA xthA-2 xthA-2 ACS41869.1 ACS41869.1 ACS38131.1 ACS38131.1 ACS41872.1 ACS41872.1 mraW mraW rplU rplU
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ACS41871.1Conserved hypothetical protein with putative pseudouridine synthase-like domain; Homologs of previously reported genes of unknown function; Belongs to the pseudouridine synthase RsuA family. (669 aa)    
Predicted Functional Partners:
engA
GTP-binding protein EngA, GTPase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.924
yhhF
Putative methyltransferase with SAM-dependent methyltransferase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     0.875
cmk
Cytidine monophosphate (CMP) kinase; Function of strongly homologous gene; enzyme.
  
 0.862
xthA
Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI); Function of strongly homologous gene; enzyme.
  
    0.783
xthA-2
Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI); Function of strongly homologous gene; enzyme.
  
    0.783
ACS41869.1
Putative oxidoreductase precursor, putative aldo/keto reductase precursor (tat pathway signal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.559
ACS38131.1
Pseudouridine synthase, RluD; Function of strongly homologous gene; enzyme; Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.541
ACS41872.1
Conserved hypothetical protein, DUF1328; Homologs of previously reported genes of unknown function.
       0.541
mraW
S-adenosyl-dependent methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
   
 0.508
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
     0.506
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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