STRINGSTRING
ACS41891.1 ACS41891.1 rpoH-2 rpoH-2 rpoZ rpoZ rpoB rpoB rpoA rpoA rpoC rpoC rpoH rpoH rpoD rpoD ACS38289.1 ACS38289.1 ACS41771.1 ACS41771.1 ACS42445.1 ACS42445.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
ACS41891.1Transcriptional regulator, CarD family; Function of strongly homologous gene; regulator. (196 aa)    
Predicted Functional Partners:
rpoH-2
RNA polymerase sigma-32 (sigma H) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
 
 
 0.860
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 0.831
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.816
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.813
rpoC
RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.809
rpoH
RNA polymerase sigma-32 (sigma H) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
 
 
 0.800
rpoD
Sigma D (sigma 70) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
 
 
 0.779
ACS38289.1
Conserved hypothetical protein precursor; Homologs of previously reported genes of unknown function.
  
     0.630
ACS41771.1
NADH:flavin oxidoreductase/NADH oxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
    0.613
ACS42445.1
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.568
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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