node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
nusG | rplA | MexAM1_META1p4384 | MexAM1_META1p4386 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.945 |
nusG | rplC | MexAM1_META1p4384 | MexAM1_META1p2153 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.922 |
nusG | rplE | MexAM1_META1p4384 | MexAM1_META1p2180 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 50S ribosomal subunit protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.935 |
nusG | rplF | MexAM1_META1p4384 | MexAM1_META1p2177 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. | 0.934 |
nusG | rplK | MexAM1_META1p4384 | MexAM1_META1p4385 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.994 |
nusG | rplL-2 | MexAM1_META1p4384 | MexAM1_META1p4404 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 50S ribosomal subunit protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.979 |
nusG | rpoB | MexAM1_META1p4384 | MexAM1_META1p4405 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
nusG | rpsB | MexAM1_META1p4384 | MexAM1_META1p2057 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 30S ribosomal protein S2; Function of strongly homologous gene; structure; Belongs to the universal ribosomal protein uS2 family. | 0.947 |
nusG | rpsC | MexAM1_META1p4384 | MexAM1_META1p2159 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.964 |
nusG | rpsL | MexAM1_META1p4384 | MexAM1_META1p2148 | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.938 |
rplA | nusG | MexAM1_META1p4386 | MexAM1_META1p4384 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Transcription termination factor; Participates in transcription elongation, termination and antitermination. | 0.945 |
rplA | rplC | MexAM1_META1p4386 | MexAM1_META1p2153 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.992 |
rplA | rplE | MexAM1_META1p4386 | MexAM1_META1p2180 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 50S ribosomal subunit protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.998 |
rplA | rplF | MexAM1_META1p4386 | MexAM1_META1p2177 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. | 0.992 |
rplA | rplK | MexAM1_META1p4386 | MexAM1_META1p4385 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplA | rplL-2 | MexAM1_META1p4386 | MexAM1_META1p4404 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 50S ribosomal subunit protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.990 |
rplA | rpoB | MexAM1_META1p4386 | MexAM1_META1p4405 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.966 |
rplA | rpsB | MexAM1_META1p4386 | MexAM1_META1p2057 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 30S ribosomal protein S2; Function of strongly homologous gene; structure; Belongs to the universal ribosomal protein uS2 family. | 0.992 |
rplA | rpsC | MexAM1_META1p4386 | MexAM1_META1p2159 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.986 |
rplA | rpsL | MexAM1_META1p4386 | MexAM1_META1p2148 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 30S ribosomal subunit protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.976 |