STRINGSTRING
depB depB phaC phaC ACS41800.1 ACS41800.1 depA depA hbd hbd phaR phaR croA croA ACS42331.1 ACS42331.1 phaB phaB phaA phaA ACS42225.1 ACS42225.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
depBPHB depolymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (454 aa)    
Predicted Functional Partners:
phaC
Polyhydroxyalkanoate synthase subunit PhaC; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.984
ACS41800.1
Intracellular PHB depolymerase, polyhydroxyalkanoate depolymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.907
depA
Intracellular PHB depolymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.902
hbd
D-beta-hydroxybutyrate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
   
 0.788
phaR
Putative regulator for granule-associated proteins, PHB biosynthesis and acetyl-CoA flux; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   
 0.695
croA
3-hydroxybutyryl-CoA dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.664
ACS42331.1
Metal-dependent phosphohydrolase; Function of strongly homologous gene; enzyme.
  
   
 0.646
phaB
acetoacetyl-CoA reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
   
 0.597
phaA
Beta-ketothiolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.497
ACS42225.1
Putative D-lactate dehydrogenase (cytochrome); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.456
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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