ACS42663.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS42663.1

Hypothetical protein; No homology to any previously reported sequences. (778 aa)

Predicted Functional Partners:

ACS42664.1

0.773

rpoC

0.513

rpoB

0.507

rpoA

0.476

rpoZ

0.467

ACS42662.1

0.450

ACS41670.1

0.404

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS41670.1	ACS42663.1	MexAM1_META1p3990	MexAM1_META1p5059	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.404
ACS42662.1	ACS42663.1	MexAM1_META1p5058	MexAM1_META1p5059	Putative EPS I polysaccharide export inner membrane protein (epsE-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.	Hypothetical protein; No homology to any previously reported sequences.	0.450
ACS42662.1	ACS42664.1	MexAM1_META1p5058	MexAM1_META1p5060	Putative EPS I polysaccharide export inner membrane protein (epsE-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.	Hypothetical protein; No homology to any previously reported sequences.	0.450
ACS42663.1	ACS41670.1	MexAM1_META1p5059	MexAM1_META1p3990	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.404
ACS42663.1	ACS42662.1	MexAM1_META1p5059	MexAM1_META1p5058	Hypothetical protein; No homology to any previously reported sequences.	Putative EPS I polysaccharide export inner membrane protein (epsE-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.	0.450
ACS42663.1	ACS42664.1	MexAM1_META1p5059	MexAM1_META1p5060	Hypothetical protein; No homology to any previously reported sequences.	Hypothetical protein; No homology to any previously reported sequences.	0.773
ACS42663.1	rpoA	MexAM1_META1p5059	MexAM1_META1p2167	Hypothetical protein; No homology to any previously reported sequences.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.476
ACS42663.1	rpoB	MexAM1_META1p5059	MexAM1_META1p4405	Hypothetical protein; No homology to any previously reported sequences.	RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.507
ACS42663.1	rpoC	MexAM1_META1p5059	MexAM1_META1p4406	Hypothetical protein; No homology to any previously reported sequences.	RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.513
ACS42663.1	rpoZ	MexAM1_META1p5059	MexAM1_META1p3409	Hypothetical protein; No homology to any previously reported sequences.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.467
ACS42664.1	ACS42662.1	MexAM1_META1p5060	MexAM1_META1p5058	Hypothetical protein; No homology to any previously reported sequences.	Putative EPS I polysaccharide export inner membrane protein (epsE-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.	0.450
ACS42664.1	ACS42663.1	MexAM1_META1p5060	MexAM1_META1p5059	Hypothetical protein; No homology to any previously reported sequences.	Hypothetical protein; No homology to any previously reported sequences.	0.773
rpoA	ACS42663.1	MexAM1_META1p2167	MexAM1_META1p5059	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; No homology to any previously reported sequences.	0.476
rpoA	rpoB	MexAM1_META1p2167	MexAM1_META1p4405	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
rpoA	rpoC	MexAM1_META1p2167	MexAM1_META1p4406	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
rpoA	rpoZ	MexAM1_META1p2167	MexAM1_META1p3409	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.993
rpoB	ACS42663.1	MexAM1_META1p4405	MexAM1_META1p5059	RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein; No homology to any previously reported sequences.	0.507
rpoB	rpoA	MexAM1_META1p4405	MexAM1_META1p2167	RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
rpoB	rpoC	MexAM1_META1p4405	MexAM1_META1p4406	RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	MexAM1_META1p4405	MexAM1_META1p3409	RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.992