ACS42748.1 protein (Methylorubrum extorquens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACS42748.1

Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (183 aa)

Predicted Functional Partners:

ACS41647.1

0.753

ACS40094.1

0.742

parB

0.737

ACS39835.1

0.728

ACS38297.1

0.721

ACS40154.1

0.699

ACS40832.1

0.684

ACS40071.1

0.682

ACS42116.1

0.682

ACS38285.1

0.668

Your Current Organism:

Methylorubrum extorquens

NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACS38285.1	ACS38297.1	MexAM1_META1p0333	MexAM1_META1p0345	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	0.766
ACS38285.1	ACS39835.1	MexAM1_META1p0333	MexAM1_META1p2033	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.454
ACS38285.1	ACS40071.1	MexAM1_META1p0333	MexAM1_META1p2287	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.523
ACS38285.1	ACS40094.1	MexAM1_META1p0333	MexAM1_META1p2310	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.591
ACS38285.1	ACS40154.1	MexAM1_META1p0333	MexAM1_META1p2371	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Thiamine-phosphate pyrophosphorylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.479
ACS38285.1	ACS40832.1	MexAM1_META1p0333	MexAM1_META1p3084	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with putative cheZ domain; Homologs of previously reported genes of unknown function.	0.925
ACS38285.1	ACS42116.1	MexAM1_META1p0333	MexAM1_META1p4485	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Putative flagellar hook length determination protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.807
ACS38285.1	ACS42748.1	MexAM1_META1p0333	MexAM1_META1p5144	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.668
ACS38297.1	ACS38285.1	MexAM1_META1p0345	MexAM1_META1p0333	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	0.766
ACS38297.1	ACS40071.1	MexAM1_META1p0345	MexAM1_META1p2287	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.755
ACS38297.1	ACS40094.1	MexAM1_META1p0345	MexAM1_META1p2310	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.726
ACS38297.1	ACS40832.1	MexAM1_META1p0345	MexAM1_META1p3084	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with putative cheZ domain; Homologs of previously reported genes of unknown function.	0.766
ACS38297.1	ACS42116.1	MexAM1_META1p0345	MexAM1_META1p4485	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	Putative flagellar hook length determination protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.775
ACS38297.1	ACS42748.1	MexAM1_META1p0345	MexAM1_META1p5144	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.721
ACS39835.1	ACS38285.1	MexAM1_META1p2033	MexAM1_META1p0333	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	0.454
ACS39835.1	ACS40832.1	MexAM1_META1p2033	MexAM1_META1p3084	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with putative cheZ domain; Homologs of previously reported genes of unknown function.	0.426
ACS39835.1	ACS42116.1	MexAM1_META1p2033	MexAM1_META1p4485	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative flagellar hook length determination protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.584
ACS39835.1	ACS42748.1	MexAM1_META1p2033	MexAM1_META1p5144	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.728
ACS40071.1	ACS38285.1	MexAM1_META1p2287	MexAM1_META1p0333	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with chemotaxis protein cheZ-like domain; Homologs of previously reported genes of unknown function.	0.523
ACS40071.1	ACS38297.1	MexAM1_META1p2287	MexAM1_META1p0345	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein with putative exported protein, tetratricopeptide TPR_4 domain; Homologs of previously reported genes of unknown function.	0.755