STRINGSTRING
ACS42773.1 ACS42773.1 rpoD rpoD ccrfM ccrfM ACS41179.1 ACS41179.1 ACS39792.1 ACS39792.1 cobT-2 cobT-2 atpF-2 atpF-2 ACS40919.1 ACS40919.1 ACS42445.1 ACS42445.1 rpoH rpoH ACS38289.1 ACS38289.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ACS42773.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (179 aa)    
Predicted Functional Partners:
rpoD
Sigma D (sigma 70) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 
 0.792
ccrfM
Site-specific DNA-methyltransferase (adenine-specific); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
  
   
 0.736
ACS41179.1
Putative chaperone protein, DnaJ domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
   
 0.710
ACS39792.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.668
cobT-2
Cobaltochelatase (cobT protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.663
atpF-2
Putative F0F1 ATP synthase, subunit b (atpF); Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.656
ACS40919.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.641
ACS42445.1
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.640
rpoH
RNA polymerase sigma-32 (sigma H) factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
 
 
 0.633
ACS38289.1
Conserved hypothetical protein precursor; Homologs of previously reported genes of unknown function.
  
     0.602
Your Current Organism:
Methylorubrum extorquens
NCBI taxonomy Id: 272630
Other names: M. extorquens AM1, Methylobacterium extorquens AM1, Methylorubrum extorquens AM1, Pseudomonas sp. AM1
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