Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0499 | cupA1 | PA0499 | PA2128 | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.853 |
| PA0499 | cupC1 | PA0499 | PA0992 | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.403 |
| PA0499 | cupC3 | PA0499 | PA0994 | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.901 |
| PA0788 | cupC3 | PA0788 | PA0994 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.810 |
| PA4651 | cupA1 | PA4651 | PA2128 | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.522 |
| PA4651 | cupC1 | PA4651 | PA0992 | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.403 |
| PA4651 | cupC3 | PA4651 | PA0994 | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.845 |
| cupA1 | PA0499 | PA2128 | PA0499 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.853 |
| cupA1 | PA4651 | PA2128 | PA4651 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.522 |
| cupA1 | cupA2 | PA2128 | PA2129 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.982 |
| cupA1 | cupA5 | PA2128 | PA2132 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.988 |
| cupA1 | cupB2 | PA2128 | PA4085 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupB2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.906 |
| cupA1 | cupB4 | PA2128 | PA4083 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupB4; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.923 |
| cupA1 | cupC1 | PA2128 | PA0992 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.706 |
| cupA1 | cupC2 | PA2128 | PA0993 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupC2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.894 |
| cupA1 | cupC3 | PA2128 | PA0994 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.904 |
| cupA2 | cupA1 | PA2129 | PA2128 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.982 |
| cupA2 | cupA5 | PA2129 | PA2132 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.873 |
| cupA2 | cupC1 | PA2129 | PA0992 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.591 |
| cupA2 | cupC3 | PA2129 | PA0994 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.974 |
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