Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA1209 | gltB | PA1209 | PA5036 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.536 |
| PA1209 | pvdL | PA1209 | PA2424 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.754 |
| PA1209 | rplO | PA1209 | PA4244 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.545 |
| PA1209 | rplQ | PA1209 | PA4237 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.544 |
| PA1209 | rplU | PA1209 | PA4568 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.509 |
| PA1209 | rpsQ | PA1209 | PA4254 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.541 |
| PA1209 | sodB | PA1209 | PA4366 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.546 |
| PA1209 | sodM | PA1209 | PA4468 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.545 |
| PA1209 | truA | PA1209 | PA3114 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | tRNA-pseudouridine synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.546 |
| PA1209 | ybeY | PA1209 | PA3982 | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.557 |
| gltB | PA1209 | PA5036 | PA1209 | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | 0.536 |
| gltB | pvdL | PA5036 | PA2424 | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.487 |
| gltB | sodB | PA5036 | PA4366 | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.465 |
| gltB | sodM | PA5036 | PA4468 | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.461 |
| pvdL | PA1209 | PA2424 | PA1209 | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. | 0.754 |
| pvdL | gltB | PA2424 | PA5036 | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.487 |
| pvdL | rplO | PA2424 | PA4244 | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.890 |
| pvdL | rplQ | PA2424 | PA4237 | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.901 |
| pvdL | rplU | PA2424 | PA4568 | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.933 |
| pvdL | rpsQ | PA2424 | PA4254 | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.858 |
page 1 of 5