STRINGSTRING
Plav_3652 Plav_3652 Plav_3651 Plav_3651 Plav_3650 Plav_3650 Plav_3649 Plav_3649 Plav_3648 Plav_3648 Plav_3647 Plav_3647
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Plav_3652Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: pau:PA14_01410 putative transcriptional regulator. (164 aa)    
Predicted Functional Partners:
Plav_3651
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_01430 putative short chain dehydrogenase.
       0.538
Plav_3650
PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5151 hypothetical protein.
       0.497
Plav_3649
PFAM: DSBA oxidoreductase; KEGG: pau:PA14_01440 putative 2-hydroxychromene-2-carboxylate isomerase.
       0.483
Plav_3648
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_3013 short-chain dehydrogenase/reductase SDR.
       0.453
Plav_3647
KEGG: rpe:RPE_0758 hypothetical protein.
       0.408
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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