STRINGSTRING
Plav_3651 Plav_3651 Plav_3650 Plav_3650 Plav_3649 Plav_3649 Plav_3648 Plav_3648 Plav_3647 Plav_3647 Plav_1657 Plav_1657 Plav_3652 Plav_3652 Plav_2619 Plav_2619 Plav_1137 Plav_1137 Plav_0559 Plav_0559 Plav_3646 Plav_3646
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Plav_3651PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_01430 putative short chain dehydrogenase. (242 aa)    
Predicted Functional Partners:
Plav_3650
PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5151 hypothetical protein.
 
    0.900
Plav_3649
PFAM: DSBA oxidoreductase; KEGG: pau:PA14_01440 putative 2-hydroxychromene-2-carboxylate isomerase.
 
    0.809
Plav_3648
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_3013 short-chain dehydrogenase/reductase SDR.
 
    
0.676
Plav_3647
KEGG: rpe:RPE_0758 hypothetical protein.
       0.600
Plav_1657
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr2256 hypothetical oxidoreductase.
  
 
 
 0.591
Plav_3652
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: pau:PA14_01410 putative transcriptional regulator.
       0.538
Plav_2619
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase.
  
 
 
 0.516
Plav_1137
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_3997 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.512
Plav_0559
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sal:Sala_1855 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.499
Plav_3646
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpc:RPC_0364 UBA/ThiF-type NAD/FAD binding fold.
       0.494
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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