STRINGSTRING
Smal_1718 Smal_1718 Smal_1719 Smal_1719 Smal_1720 Smal_1720 Smal_2334 Smal_2334 Smal_2253 Smal_2253 Smal_4011 Smal_4011
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_1718PFAM: DoxX family protein; KEGG: pau:PA14_09540 hypothetical protein. (141 aa)    
Predicted Functional Partners:
Smal_1719
PFAM: regulatory protein TetR; KEGG: dac:Daci_4533 transcriptional regulator, TetR family.
       0.527
Smal_1720
KEGG: dac:Daci_4532 transport protein.
       0.527
Smal_2334
PFAM: Amidohydrolase 3; KEGG: xcb:XC_1943 hypothetical protein.
 
     0.478
Smal_2253
PFAM: Fusaric acid resistance protein conserved region; KEGG: rpc:RPC_1992 fusaric acid resistance protein conserved region.
  
     0.417
Smal_4011
PFAM: Fusaric acid resistance protein conserved region; KEGG: xac:XAC4307 hypothetical protein.
  
     0.410
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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