STRINGSTRING
Pden_0206 Pden_0206 Pden_0207 Pden_0207 Pden_2564 Pden_2564 Pden_0836 Pden_0836 Pden_0205 Pden_0205 Pden_2286 Pden_2286
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Pden_0206PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pau:PA14_10280 putative short-chain dehydrogenase. (263 aa)    
Predicted Functional Partners:
Pden_0207
PFAM: alpha/beta hydrolase fold; KEGG: rso:RS05450 putative hydrolase signal peptide protein.
  
 
 0.507
Pden_2564
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: stm:STM0588 enterobactin synthetase, component F (nonribosomal peptide synthetase).
 
 
 0.504
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
 
 0.500
Pden_0205
Hypothetical protein.
       0.498
Pden_2286
PFAM: sulfatase; KEGG: rsp:RSP_0594 putative choline sulfatase.
   
 
 0.469
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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