STRINGSTRING
Cpin_2765 Cpin_2765 Cpin_2764 Cpin_2764 Cpin_2763 Cpin_2763 Cpin_0725 Cpin_0725 Cpin_2244 Cpin_2244 Cpin_2601 Cpin_2601 Cpin_2766 Cpin_2766 Cpin_2762 Cpin_2762 Cpin_2767 Cpin_2767 Cpin_2768 Cpin_2768 Cpin_2769 Cpin_2769
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpin_2765PFAM: Ethanolamine ammonia-lyase light chain; KEGG: pau:PA14_11760 ethanolamine ammonia-lyase small subunit; Belongs to the EutC family. (260 aa)    
Predicted Functional Partners:
Cpin_2764
PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pmy:Pmen_2682 ethanolamine ammonia lyase large subunit.
 
 0.999
Cpin_2763
TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: pfo:Pfl01_4034 amino acid permease-associated region.
 
  
 0.915
Cpin_0725
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bbt:BBta_7586 putative glycerophosphoryl diester phosphodiesterase.
     
  0.900
Cpin_2244
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: hypothetical protein.
     
  0.900
Cpin_2601
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rfr:Rfer_1116 glycerophosphoryl diester phosphodiesterase.
     
  0.900
Cpin_2766
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: ilo:IL1936 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
       0.548
Cpin_2762
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpt:Bpet3226 AraC family transcriptional regulator.
       0.504
Cpin_2767
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: nwi:Nwi_0657 FecR protein.
       0.449
Cpin_2768
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
       0.419
Cpin_2769
KEGG: hypothetical protein.
       0.414
Your Current Organism:
Chitinophaga pinensis
NCBI taxonomy Id: 485918
Other names: C. pinensis DSM 2588, Chitinophaga pinensis ACM 2034, Chitinophaga pinensis DSM 2588, Chitinophaga pinensis str. DSM 2588, Chitinophaga pinensis strain DSM 2588
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