STRINGSTRING
Xaut_3580 Xaut_3580 Xaut_3582 Xaut_3582 Xaut_3581 Xaut_3581 Xaut_2790 Xaut_2790 rnc rnc Xaut_3583 Xaut_3583 Xaut_3584 Xaut_3584 Xaut_3055 Xaut_3055
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_3580PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_12850 probable acetyltransferase. (186 aa)    
Predicted Functional Partners:
Xaut_3582
TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rru:Rru_A1132 anthranilate synthase.
  
  
 0.794
Xaut_3581
PFAM: aminotransferase class IV; KEGG: rru:Rru_A1131 aminotransferase, class IV.
  
    0.776
Xaut_2790
KEGG: bbt:BBta_1093 L-ornithine 5-monooxygenase (L-ornithine N5-oxygenase).
  
  
 0.543
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.482
Xaut_3583
PFAM: AzlC family protein; KEGG: rpa:RPA3143 hypothetical protein.
       0.426
Xaut_3584
KEGG: rpd:RPD_3048 hypothetical protein.
       0.425
Xaut_3055
PFAM: inositol monophosphatase; KEGG: mlo:mlr3921 putative myo-inositol-1(or 4)-monophosphatase.
      0.411
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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