STRINGSTRING
Plav_0087 Plav_0087 Plav_0163 Plav_0163 Plav_1363 Plav_1363 Plav_2007 Plav_2007 Plav_1364 Plav_1364 Plav_1534 Plav_1534 Plav_2006 Plav_2006 Plav_0027 Plav_0027 Plav_1157 Plav_1157 Plav_1155 Plav_1155 Plav_1117 Plav_1117
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0087PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_13130 hypothetical protein. (665 aa)    
Predicted Functional Partners:
Plav_0163
PFAM: protein of unknown function DUF1329; KEGG: reh:H16_A0834 hypothetical protein.
 
    0.858
Plav_1363
PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_2805 hypothetical protein.
 
    0.858
Plav_2007
PFAM: protein of unknown function DUF1329; KEGG: shw:Sputw3181_1811 protein of unknown function DUF1329.
 
    0.858
Plav_1364
KEGG: pfl:PFL_3279 BNR/Asp-box repeat protein.
 
    0.837
Plav_1534
KEGG: azo:azo2253 probable exporter of RND superfamily.
 
    0.783
Plav_2006
KEGG: azo:azo2253 probable exporter of RND superfamily.
 
    0.783
Plav_0027
KEGG: azo:azo2253 probable exporter of RND superfamily.
 
    0.782
Plav_1157
KEGG: mpt:Mpe_B0584 hypothetical protein.
 
    0.738
Plav_1155
KEGG: mpt:Mpe_A0397 exporters of the RND superfamily.
 
    0.704
Plav_1117
KEGG: abo:ABO_1242 hypothetical protein.
 
    0.664
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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