STRINGSTRING
Ssed_1955 Ssed_1955 Ssed_1954 Ssed_1954 Ssed_1957 Ssed_1957 Ssed_1956 Ssed_1956 Ssed_1953 Ssed_1953 Ssed_1938 Ssed_1938 Ssed_2764 Ssed_2764 Ssed_1964 Ssed_1964 Ssed_2763 Ssed_2763 Ssed_1958 Ssed_1958 Ssed_2765 Ssed_2765
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Ssed_1955KEGG: pau:PA14_13800 respiratory nitrate reductase beta subuni. (512 aa)    
Predicted Functional Partners:
Ssed_1954
KEGG: psa:PST_0896 respiratory nitrate reductase alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.999
Ssed_1957
Nitrate reductase; KEGG: psa:PST_0899 respiratory nitrate reductase gamma chain.
 
 0.999
Ssed_1956
KEGG: maq:Maqu_3084 nitrate reductase molybdenum cofactor assembly chaperone.
 
 
 0.998
Ssed_1953
KEGG: hch:HCH_04020 nitrate/nitrite transporter.
 
 
 0.994
Ssed_1938
KEGG: hch:HCH_03999 nitrate/nitrite transporter.
 
 
 0.991
Ssed_2764
KEGG: sfr:Sfri_1510 nitrite reductase (NAD(P)H), small subunit.
  
 
 0.989
Ssed_1964
KEGG: hch:HCH_04000 nitrate/nitrite transporter.
 
 
 0.968
Ssed_2763
KEGG: sfr:Sfri_1511 nitrite transporter.
 
 
 0.968
Ssed_1958
KEGG: psa:PST_0900 probable peptidyl-prolyl cis-trans isomerase, PpiC-type.
 
    0.954
Ssed_2765
KEGG: sfr:Sfri_1509 nitrite reductase (NAD(P)H), large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.951
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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