STRINGSTRING
Spro_0617 Spro_0617 Spro_0616 Spro_0616 Spro_0622 Spro_0622 Spro_0619 Spro_0619 Spro_1593 Spro_1593 Spro_4476 Spro_4476 Spro_1781 Spro_1781 Spro_0618 Spro_0618 Spro_2509 Spro_2509 Spro_3657 Spro_3657 Spro_2511 Spro_2511
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_0617PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_15270 putative permease. (390 aa)    
Predicted Functional Partners:
Spro_0616
PFAM: histone deacetylase superfamily; KEGG: kpn:KPN_00530 putative deacetylase.
 
     0.844
Spro_0622
MoaF; KEGG: bpm:BURPS1710b_A2463 MoaF.
  
     0.759
Spro_0619
PFAM: amino acid permease-associated region; KEGG: plu:plu4273 hypothetical protein.
  
     0.746
Spro_1593
KEGG: pst:PSPTO_5546 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.743
Spro_4476
KEGG: kpn:KPN_02513 hypothetical protein.
  
     0.735
Spro_1781
KEGG: ecc:c3648 hypothetical protein.
  
     0.716
Spro_0618
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: plu:plu4274 hypothetical protein.
 
     0.699
Spro_2509
KEGG: kpn:KPN_04100 hypothetical protein.
  
     0.679
Spro_3657
KEGG: yen:YE1029 putative integral membrane protein.
  
     0.650
Spro_2511
KEGG: kpn:KPN_01798 hypothetical protein.
  
     0.649
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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