STRINGSTRING
Ssed_1727 Ssed_1727 Ssed_1996 Ssed_1996 Ssed_1776 Ssed_1776 Ssed_2686 Ssed_2686 Ssed_0896 Ssed_0896 Ssed_0901 Ssed_0901 Ssed_0161 Ssed_0161 Ssed_0276 Ssed_0276 Ssed_1311 Ssed_1311 Ssed_2914 Ssed_2914 Ssed_1129 Ssed_1129
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_1727KEGG: pau:PA14_23540 putative transcriptional activator; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
Ssed_1996
KEGG: aha:AHA_0957 HTH-type transcriptional regulator XapR; Belongs to the LysR transcriptional regulatory family.
  
     0.727
Ssed_1776
KEGG: sit:TM1040_3283 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.709
Ssed_2686
KEGG: slo:Shew_2153 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.689
Ssed_0896
KEGG: shw:Sputw3181_0790 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.685
Ssed_0901
KEGG: shn:Shewana3_0884 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.675
Ssed_0161
KEGG: ppr:PBPRB1939 hypothetical transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.673
Ssed_0276
KEGG: sfr:Sfri_3892 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.671
Ssed_1311
Transcriptional regulator-like protein; KEGG: ppr:PBPRA0141 putative transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.657
Ssed_2914
KEGG: sbl:Sbal_2815 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.621
Ssed_1129
KEGG: slo:Shew_1035 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.589
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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